Publikationsserver der Universitätsbibliothek Marburg

Titel:Die Rolle des RNA-bindenden Proteins Rrm4 während des polaren Wachstums von Ustilago maydis
Autor:Koepke, Janine
Weitere Beteiligte: Feldbrügge, Michael (Prof. Dr.)
Veröffentlicht:2011
URI:https://archiv.ub.uni-marburg.de/diss/z2012/0053
DOI: https://doi.org/10.17192/z2012.0053
URN: urn:nbn:de:hebis:04-z2012-00537
DDC: Biowissenschaften, Biologie
Titel (trans.):The role of the RNA-binding protein RRm4 during filamentous growth of Ustilago maydis
Publikationsdatum:2012-02-16
Lizenz:https://rightsstatements.org/vocab/InC-NC/1.0/

Dokument

Schlagwörter:
Sekretion, Ustilago, RNS-Bindungsproteine, Secretion, Proteom-Analyse, mRNA-Transport, RNA-binding protein, Intrazellulärer Transport, mRNA-Transport, 2-D-Gele, Filament

Zusammenfassung:
Polarität und funktionelle Kompartimentierung sind grundlegende Konzepte eukaryontischer Zellen. Der aktive Transport von Vesikeln, Proteinen und mRNA entlang des Zytoskeletts ist ein wichtiger Bestandteil bei der Etablierung und Aufrechterhaltung einer zellulären Polaritätsachse. In Ustilago maydis ist das RNA-bindende Protein Rrm4 am Mikrotubuli-abhängigen mRNA-Transport spezifischer Transkripte während der Filamentbildung beteiligt. Dieser Transportprozess ist wichtig für das polare, filamentöse Wachstum und die Pathogenität des Pilzes. Der Verlust von Rrm4 führt zu erhöhtem bipolarem Wachstum und einer gedrungenen Filamentmorphologie. Die eigentliche zellbiologische Funktion dieses mRNA-Langstreckentransportes ist noch weitestgehend ungeklärt. In dieser Arbeit wurden, basierend auf einer differentiellen Proteom-Analyse zwischen Wildtyp- und rrm4-Filamenten, sieben differentiell exprimierte Proteine identifiziert. Ihre funktionelle Analyse spricht für eine Beteiligung des Rrm4-abhängigen mRNA-Transportes an der Sekretion eines Zellwand-abbauendem Enzyms und der Biogenese von Mitochondrien. Die Deletion von rrm4 resultierte in einer intrazellulären Akkumulation der Endochitinase Cts1, wobei weder die subapikale Lokalisation noch die Aktivität der Cts1 beeinträchtigt wurde. Zudem bestätigte eine FISH-Analyse die cts1-mRNA als direktes Ziel-Transkript von Rrm4 und die Anreicherung der Cts1 konnte auf einen Defekt in der Sekretion von rrm4-Filamente zurückgeführt werden. Des Weiteren wurde anhand von drei differentiell exprimierten Mitochondrienproteinen in rrm4-Filamenten eine Dysfunktion identifiziert, welche sich in einer gesteigerten mitochondriellen Superoxid-Produktion äußerte. Um weitere Einblicke in den mRNA-Transport zu gewinnen, wurde eine Lokalisationsstudie des Poly-(A)-bindende Proteins (Pab1) durchgeführt. In Wildtyp-Filamenten ko-lokalisierte Pab1 mit Rrm4, in vivo, in pendelnden Partikeln. Interessanterweise wurden in rrm4-Filamenten keine sich bewegenden Pab1-Partikel detektiert. Folglich bildet Rrm4 die Haupttransporteinheit des mRNA-Langstreckentransports in Filamenten. Dementsprechend reguliert der Rrm4-abhängige mRNA-Transport apikale Sekretionsprozesse und scheint zusätzlich die gleichmäßige Versorgung des Protein-Imports in die Mitochondrien zu steuern.

Bibliographie / References

  1. George R, Walsh P, Beddoe T, Lithgow T (2002) The nascent polypeptide-associated complex (NAC) promotes interaction of ribosomes with the mitochondrial surface in vivo. FEBS Lett 516: 213-216
  2. Lecuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes TR, Tomancak P, Krause HM (2007) Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 131: 174-187
  3. Kasprzewska A (2003) Plant chitinases--regulation and function. Cell Mol Biol Lett 8: 809-824
  4. Reichard U, Hung CY, Thomas PW, Cole GT (2000) Disruption of the gene which encodes a serodiagnostic antigen and chitinase of the human fungal pathogen Coccidioides immitis. Infect Immun 68: 5830-5838
  5. Jaques AK, Fukamizo T, Hall D, Barton RC, Escott GM, Parkinson T, Hitchcock CA, Adams DJ (2003) Disruption of the gene encoding the ChiB1 chitinase of Aspergillus fumigatus and characterization of a recombinant gene product. Microbiology 149: 2931-2939
  6. Oeffinger M, Wei KE, Rogers R, DeGrasse JA, Chait BT, Aitchison JD, Rout MP (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4: 951-956
  7. Gregory LA, Aguissa-Toure AH, Pinaud N, Legrand P, Gleizes PE, Fribourg S (2007) Molecular basis of Diamond-Blackfan anemia: structure and function analysis of RPS19. Nucleic Acids Res 35: 5913-5921
  8. Mazumder B, Sampath P, Seshadri V, Maitra RK, DiCorleto PE, Fox PL (2003) Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control. Cell 115: 187-198
  9. Murphy MP (2009) How mitochondria produce reactive oxygen species. Biochem J 417: 1-13
  10. Fusco D, Accornero N, Lavoie B, Shenoy SM, Blanchard JM, Singer RH, Bertrand E (2003) Single mRNA molecules demonstrate probabilistic movement in living mammalian cells. Curr Biol 13: 161-167
  11. Voos W, Rottgers K (2002) Molecular chaperones as essential mediators of mitochondrial biogenesis. Biochim Biophys Acta 1592: 51-62
  12. Ule J, Jensen K, Mele A, Darnell RB (2005) CLIP: a method for identifying protein-RNA interaction sites in living cells. Methods 37: 376-386
  13. Gillissen B, Bergemann J, Sandmann C, Schroeer B, Bölker M, Kahmann R (1992) A two-component regulatory system for self/non-self recognition in Ustilago maydis. Cell 68: 647-657
  14. Holliday R (2004) Early studies on recombination and DNA repair in Ustilago maydis. DNA Repair (Amst) 3: 671-682
  15. Kozlov G, Menade M, Rosenauer A, Nguyen L, Gehring K (2010) Molecular determinants of PAM2 recognition by the MLLE domain of poly(A)-binding protein. J Mol Biol 397: 397-407
  16. Döhlemann G, Wahl R, Vranes M, de Vries RP, Kamper J, Kahmann R (2008b) Establishment of compatibility in the Ustilago maydis/maize pathosystem. J Plant Physiol 165: 29-40
  17. Requena N, Alberti-Segui C, Winzenburg E, Horn C, Schliwa M, Philippsen P, Liese R, Fischer R (2001) Genetic evidence for a microtubule-destabilizing effect of conventional kinesin and analysis of its consequences for the control of nuclear distribution in Aspergillus nidulans. Mol Microbiol 42: 121-132
  18. Letunic I, Doerks T, Bork P (2009) SMART 6: recent updates and new developments. Nucleic Acids Res 37: D229-232
  19. Gu W, Deng Y, Zenklusen D, Singer RH (2004) A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes Dev 18: 1452-1465
  20. Döhlemann G, Wahl R, Horst RJ, Voll LM, Usadel B, Poree F, Stitt M, Pons-Kuhnemann J, Sonnewald U, Kahmann R, Kamper J (2008a) Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant J 56: 181-195
  21. Palacios IM, St Johnston D (2002) Kinesin light chain-independent function of the Kinesin heavy chain in cytoplasmic streaming and posterior localisation in the Drosophila oocyte. Development 129: 5473-5485
  22. Martin SG, Leclerc V, Smith-Litiere K, St Johnston D (2003) The identification of novel genes required for Drosophila anteroposterior axis formation in a germline clone screen using GFP-Staufen. Development 130: 4201-4215
  23. Jenny A, Hachet O, Zavorszky P, Cyrklaff A, Weston MD, Johnston DS, Erdelyi M, Ephrussi A (2006) A translation-independent role of oskar RNA in early Drosophila oogenesis. Development 133: 2827-2833
  24. Mahlert M, Vogler C, Stelter K, Hause G, Basse CW (2009) The a2 mating-type-locus gene lga2 of Ustilago maydis interferes with mitochondrial dynamics and fusion, partially in dependence on a Dnm1- like fission component. J Cell Sci 122: 2402-2412
  25. Jambhekar A, DeRisi JL (2007) Cis-acting determinants of asymmetric, cytoplasmic RNA transport. RNA 13: 625-642
  26. Hüttelmaier S, Zenklusen D, Lederer M, Dictenberg J, Lorenz M, Meng X, Bassell GJ, Condeelis J, Singer RH (2005) Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1. Nature 438: 512-515
  27. Huynh JR, Munro TP, Smith-Litiere K, Lepesant JA, St Johnston D (2004) The Drosophila hnRNPA/B homolog, Hrp48, is specifically required for a distinct step in osk mRNA localization. Dev Cell 6: 625- 635
  28. Draptchinskaia N, Gustavsson P, Andersson B, Pettersson M, Willig TN, Dianzani I, Ball S, Tchernia G, Klar J, Matsson H, Tentler D, Mohandas N, Carlsson B, Dahl N (1999) The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia. Nat Genet 21: 169-175
  29. Flygare J, Aspesi A, Bailey JC, Miyake K, Caffrey JM, Karlsson S, Ellis SR (2007) Human RPS19, the gene mutated in Diamond-Blackfan anemia, encodes a ribosomal protein required for the maturation of 40S ribosomal subunits. Blood 109: 980-986
  30. Leger-Silvestre I, Caffrey JM, Dawaliby R, Alvarez-Arias DA, Gas N, Bertolone SJ, Gleizes PE, Ellis SR (2005) Specific Role for Yeast Homologs of the Diamond Blackfan Anemia-associated Rps19 Protein in Ribosome Synthesis. J Biol Chem 280: 38177-38185
  31. Chiocchetti A, Gibello L, Carando A, Aspesi A, Secco P, Garelli E, Loreni F, Angelini M, Biava A, Dahl N, Dianzani U, Ramenghi U, Santoro C, Dianzani I (2005) Interactions between RPS19, mutated in Diamond-Blackfan anemia, and the PIM-1 oncoprotein. Haematologica 90: 1453-1462
  32. Maris C, Dominguez C, Allain FH (2005) The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. Febs J 272: 2118-2131
  33. Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P (2004) SMART 4.0: towards genomic data integration. Nucleic Acids Res 32: D142-144
  34. Seidl V, Huemer B, Seiboth B, Kubicek CP (2005) A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases. FEBS J 272: 5923-5939
  35. Takizawa PA, Sil A, Swedlow JR, Herskowitz I, Vale RD (1997) Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast. Nature 389: 90-93
  36. Anhang Tabelle A1: Identifizierung von Proteinen mit LC-MS/MS Die Analyse der Daten wurde mit dem Programmpaket BioWorks 3.2 (Thermo Scientific) mittels des TurboSEQUESTTM Protein-Identifizierungs-Algorithmus ausgeführt. Die Fragment- Ionenspektren wurden gegen die U. maydis Protein-Datenbank MUMDB verglichen (http://mips.gsf.de/genre/proj/ustilago/; Datenbestand vom März 2006; 6892 vorhergesagte
  37. Yaffe MP (1991) Analysis of mitochondrial function and assembly. Methods Enzymol 194: 627-643
  38. Palacios IM, Gatfield D, St Johnston D, Izaurralde E (2004) An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay. Nature 427: 753-757
  39. Wedlich-Söldner R, Bölker M, Kahmann R, Steinberg G (2000) A putative endosomal t-SNARE links exo-and endocytosis in the phytopathogenic fungus Ustilago maydis. EMBO J 19: 1974-1986.
  40. Yamazaki H, Tanaka A, Kaneko J, Ohta A, Horiuchi H (2008) Aspergillus nidulans ChiA is a glycosylphosphatidylinositol (GPI)-anchored chitinase specifically localized at polarized growth sites. Fungal Genet Biol 45: 963-972
  41. Gierz G, Bartnicki-Garcia S (2001) A three-dimensional model of fungal morphogenesis based on the vesicle supply center concept. J Theor Biol 208: 151-164
  42. Riechmann V, Ephrussi A (2001) Axis formation during Drosophila oogenesis. Curr Opin Genet Dev 11: 374-383
  43. Dünkler A, Walther A, Specht CA, Wendland J (2005) Candida albicans CHT3 encodes the functional homolog of the Cts1 chitinase of Saccharomyces cerevisiae. Fungal Genet Biol 42: 935-947
  44. Kudin AP, Bimpong-Buta NY, Vielhaber S, Elger CE, Kunz WS (2004) Characterization of superoxide- producing sites in isolated brain mitochondria. J Biol Chem 279: 4127-4135
  45. Kuranda MJ, Robbins PW (1991) Chitinase is required for cell separation during growth of Saccharomyces cerevisiae. J Biol Chem 266: 19758-19767
  46. Ule J, Jensen KB, Ruggiu M, Mele A, Ule A, Darnell RB (2003) CLIP identifies Nova-regulated RNA networks in the brain. Science 302: 1212-1215
  47. Schmid M, Jaedicke A, Du TG, Jansen RP (2006) Coordination of endoplasmic reticulum and mRNA localization to the yeast bud. Curr Biol 16: 1538-1543
  48. Christensen JJ (1963) Corn smut caused by Ustilago maydis. Published by the American Phytopathological Society, Monograph no 2: 1-40
  49. Zielonka J, Srinivasan S, Hardy M, Ouari O, Lopez M, Vasquez-Vivar J, Avadhani NG, Kalyanaraman B (2008a) Cytochrome c-mediated oxidation of hydroethidine and mito-hydroethidine in mitochondria: identification of homo-and heterodimers. Free Radic Biol Med 44: 835-846
  50. Votyakova TV, Reynolds IJ (2001) DeltaPsi(m)-Dependent and -independent production of reactive oxygen species by rat brain mitochondria. J Neurochem 79: 266-277
  51. Hansford RG, Hogue BA, Mildaziene V (1997) Dependence of H2O2 formation by rat heart mitochondria on substrate availability and donor age. J Bioenerg Biomembr 29: 89-95
  52. Zhao H, Joseph J, Fales HM, Sokoloski EA, Levine RL, Vasquez-Vivar J, Kalyanaraman B (2005) Detection and characterization of the product of hydroethidine and intracellular superoxide by HPLC and limitations of fluorescence. Proc Natl Acad Sci U S A 102: 5727-5732
  53. Zielonka J, Vasquez-Vivar J, Kalyanaraman B (2008b) Detection of 2-hydroxyethidium in cellular systems: a unique marker product of superoxide and hydroethidine. Nat Protoc 3: 8-21
  54. Unlü M, Morgan ME, Minden JS (1997) Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18: 2071-2077
  55. Westermeier R, Scheibe B (2008) Difference gel electrophoresis based on lys/cys tagging. Methods Mol Biol 424: 73-85
  56. Hachet O, Ephrussi A (2001) Drosophila Y14 shuttles to the posterior of the oocyte and is required for oskar mRNA transport. Curr Biol 11: 1666-1674
  57. Gade D, Thiermann J, Markowsky D, Rabus R (2003) Evaluation of two-dimensional difference gel electrophoresis for protein profiling. Soluble proteins of the marine bacterium Pirellula sp. strain 1. J Mol Microbiol Biotechnol 5: 240-251
  58. Soulet F, Al Saati T, Roga S, Amalric F, Bouche G (2001) Fibroblast growth factor-2 interacts with free ribosomal protein S19. Biochem Biophys Res Commun 289: 591-596
  59. Droge W (2002) Free radicals in the physiological control of cell function. Physiol Rev 82: 47-95
  60. Moore MJ (2005) From birth to death: the complex lives of eukaryotic mRNAs. Science 309: 1514-1518
  61. Cino M, Del Maestro RF (1989) Generation of hydrogen peroxide by brain mitochondria: the effect of reoxygenation following postdecapitative ischemia. Arch Biochem Biophys 269: 623-638
  62. Grivennikova VG, Vinogradov AD (2006) Generation of superoxide by the mitochondrial Complex I. Biochim Biophys Acta 1757: 553-561
  63. Spellig T, Bottin A, Kahmann R (1996) Green fluorescent protein (GFP) as a new vital marker in the phytopathogenic fungus Ustilago maydis. Mol Gen Genet 252: 503-509
  64. Condeelis J, Singer RH (2005) How and why does beta-actin mRNA target? Biol Cell 97: 97-110
  65. Lutsch G, Stahl J, Kargel HJ, Noll F, Bielka H (1990) Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Eur J Cell Biol 51: 140-150
  66. Choesmel V, Bacqueville D, Rouquette J, Noaillac-Depeyre J, Fribourg S, Cretien A, Leblanc T, Tchernia G, Da Costa L, Gleizes PE (2007) Impaired ribosome biogenesis in Diamond-Blackfan anemia. Blood 109: 1275-1283
  67. Reineke G, Heinze B, Schirawski J, Buettner H, Kahmann R, Basse CW (2008) Indole-3-acetic acid (IAA) biosynthesis in the smut fungus Ustilago maydis and its relevance for increased IAA levels in infected tissue and host tumour formation. Mol Plant Pathol 9: 339-355
  68. Tekotte H, Davis I (2002) Intracellular mRNA localization: motors move messages. Trends Genet 18: 636-642
  69. Hirokawa N, Noda Y (2008) Intracellular transport and kinesin superfamily proteins, KIFs: structure, function, and dynamics. Physiol Rev 88: 1089-1118
  70. Tsukuda T, Carleton S, Fotheringham S, Holloman WK (1988) Isolation and characterization of an autonomously replicating sequence from Ustilago maydis. Mol Cell Biol 8: 3703-3709
  71. Steinberg G, Schliwa M, Lehmler C, Bölker M, Kahmann R, McIntosh JR (1998) Kinesin from the plant pathogenic fungus Ustilago maydis is involved in vacuole formation and cytoplasmic migration. J Cell Sci 111: 2235-2246
  72. Daigle N, Ellenberg J (2007) LambdaN-GFP: an RNA reporter system for live-cell imaging. Nat Methods 4: 633-636
  73. Paquin N, Menade M, Poirier G, Donato D, Drouet E, Chartrand P (2007) Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p. Mol Cell 26: 795-809
  74. Sylvestre J, Vialette S, Corral Debrinski M, Jacq C (2003) Long mRNAs coding for yeast mitochondrial proteins of prokaryotic origin preferentially localize to the vicinity of mitochondria. Genome Biol 4: R44 Taib M, Pinney JW, Westhead DR, McDowall KJ, Adams DJ (2005) Differential expression and extent of fungal/plant and fungal/bacterial chitinases of Aspergillus fumigatus. Arch Microbiol 184: 78-81
  75. Long RM, Singer RH, Meng X, Gonzalez I, Nasmyth K, Jansen RP (1997) Mating type switching in yeast controlled by asymmetric localization of ASH1 mRNA. Science 277: 383-387
  76. Rappas M, Niwa H, Zhang X (2004) Mechanisms of ATPases--a multi-disciplinary approach. Curr Protein Pept Sci 5: 89-105
  77. Nickel W, Rabouille C (2009) Mechanisms of regulated unconventional protein secretion. Nat Rev Mol Cell Biol 10: 148-155
  78. Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol 3: 195-205
  79. Steinhauer J, Kalderon D (2006) Microtubule polarity and axis formation in the Drosophila oocyte. Dev Dyn 235: 1455-1468
  80. Garcia M, Delaveau T, Goussard S, Jacq C (2010) Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA. EMBO Rep 11: 285-291
  81. Sambrook J, Frisch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbour, New York: Cold Spring Harbour Laboratory Press.
  82. St Johnston D (2005) Moving messages: the intracellular localization of mRNAs. Nat Rev Mol Cell Biol 6: 363-375
  83. Jansen RP (2001) mRNA localization: message on the move. Nat Rev Mol Cell Biol 2: 247-256
  84. Zarnack K, Feldbrügge M (2007) mRNA trafficking in fungi. Mol Genet Genomics
  85. Denman RB (2006) mRNPs take shape by CLIPPING and PAIRING. Bioessays 28: 1132-1143
  86. Kämper J, Reichmann M, Romeis T, Bölker M, Kahmann R (1995) Multiallelic recognition: nonself- dependent dimerization of the bE and bW homeodomain proteins in Ustilago maydis. Cell 81: 73-83
  87. Schuchardt I, Assmann D, Thines E, Schuberth C, Steinberg G (2005) Myosin-V, Kinesin-1, and Kinesin- 3 cooperate in hyphal growth of the fungus Ustilago maydis. Mol Biol Cell 16: 5191-5201
  88. Nickel W (2010) Pathways of unconventional protein secretion. Curr Opin Biotechnol 21: 621-626
  89. Fischer R, Zekert N, Takeshita N (2008) Polarized growth in fungi--interplay between the cytoskeleton, positional markers and membrane domains. Mol Microbiol 68: 813-826
  90. Kellis M, Birren BW, Lander ES (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624
  91. Neupert W (1997) Protein import into mitochondria. Annu Rev Biochem 66: 863-917
  92. Wang SL, Chang WT (1997) Purification and characterization of two bifunctional chitinases/lysozymes extracellularly produced by Pseudomonas aeruginosa K-187 in a shrimp and crab shell powder medium.
  93. Abteilung für Organismische Interaktionen von Prof. Dr. Regine Kahmann Max Planck-Institut für terrestrische Mikrobiologie, Marburg Arbeitsgruppe von Prof. Dr. Michael Feldbrügge Titel: Die Rolle des RNA-bindenden Proteins Rrm4 während des polaren Wachstums von Ustilago maydis Publikationen November 2010
  94. Feldbrügge M, Bölker M, Steinberg G, Kämper J, Kahmann R (2006) Regulatory and structural networks orchestrating mating, dimorphism, cell shape, and pathogenesis in Ustilago maydis. In The Mycota: growth, differentiation and sexuality, Fischer R, Kües U (eds), Vol. 2, pp 376-391. Springer, Berlin Heidelberg
  95. Yasuda R, Noji H, Yoshida M, Kinosita K, Jr., Itoh H (2001) Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase. Nature 410: 898-904
  96. Chartrand P, Singer RH, Long RM (2001) RNP localization and transport in yeast. Annu Rev Cell Dev Biol 17: 297-310
  97. Nishiura H, Tanase S, Shibuya Y, Futa N, Sakamoto T, Higginbottom A, Monk P, Zwirner J, Yamamoto T (2005) S19 ribosomal protein dimer augments metal-induced apoptosis in a mouse fibroblastic cell line by ligation of the C5a receptor. J Cell Biochem 94: 540-553
  98. Long RM, Gu W, Lorimer E, Singer RH, Chartrand P (2000) She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA. EMBO J 19: 6592-6601
  99. Aguilar A, Freitag M (2007) Spitzenkorper localization and intracellular traffic of green fluorescent protein-labeled CHS-3 and CHS-6 chitin synthases in living hyphae of Neurospora crassa. Eukaryot Cell 6: 1853-1864
  100. Hachet O, Ephrussi A (2004) Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 428: 959-963
  101. Nelson C, Goto S, Lund K, Hung W, Sadowski I (2003) Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12. Nature 421: 187-190
  102. St Johnston D, Beuchle D, Nusslein-Volhard C (1991) Staufen, a gene required to localize maternal RNAs in the Drosophila egg. Cell 66: 51-63
  103. Kozlov G, De Crescenzo G, Lim NS, Siddiqui N, Fantus D, Kahvejian A, Trempe JF, Elias D, Ekiel I, Sonenberg N, O'Connor-McCourt M, Gehring K (2004) Structural basis of ligand recognition by PABC, a highly specific peptide-binding domain found in poly(A)-binding protein and a HECT ubiquitin ligase. EMBO J 23: 272-281
  104. Tange TO, Nott A, Moore MJ (2004) The ever-increasing complexities of the exon junction complex.
  105. Cross RL, Muller V (2004) The evolution of A-, F-, and V-type ATP synthases and ATPases: reversals in function and changes in the H+/ATP coupling ratio. FEBS Lett 576: 1-4
  106. Li Z, Okamoto K, Hayashi Y, Sheng M (2004) The importance of dendritic mitochondria in the morphogenesis and plasticity of spines and synapses. Cell 119: 873-887
  107. Vale RD (2003) The molecular motor toolbox for intracellular transport. Cell 112: 467-480
  108. Shestakova EA, Singer RH, Condeelis J (2001) The physiological significance of beta -actin mRNA localization in determining cell polarity and directional motility. Proc Natl Acad Sci U S A 98: 7045-7050
  109. Hirst J, King MS, Pryde KR (2008) The production of reactive oxygen species by complex I. Biochem Soc Trans 36: 976-980
  110. Wiedemann N, Frazier AE, Pfanner N (2004) The protein import machinery of mitochondria. J Biol Chem 279: 14473-14476
  111. J. Koepke, F. Kaffarnik, K. Zarnack, R. Kellner, D. Begerow and M. Feldbrügge (2010) The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1. MCP. revised manuscript in preparation Juli 2009
  112. Finley D, Bartel B, Varshavsky A (1989) The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis. Nature 338: 394-401
  113. Heimel K, Scherer M, Vranes M, Wahl R, Pothiratana C, Schuler D, Vincon V, Finkernagel F, Flor-Parra I, Kamper J (2010) The transcription factor Rbf1 is the master regulator for b-mating type controlled pathogenic development in Ustilago maydis. PLoS Pathog 6
  114. Hirst J (2010) Towards the molecular mechanism of respiratory complex I. Biochem J 425: 327-339
  115. Clark I, Giniger E, Ruohola-Baker H, Jan LY, Jan YN (1994) Transient posterior localization of a kinesin fusion protein reflects anteroposterior polarity of the Drosophila oocyte. Curr Biol 4: 289-300
  116. Johnstone O, Lasko P (2001) Translational regulation and RNA localization in Drosophila oocytes and embryos. Annu Rev Genet 35: 365-406
  117. Neupert W, Herrmann JM (2007) Translocation of proteins into mitochondria. Annu Rev Biochem 76: 723-749
  118. Howard RJ (1981) Ultrastructural analysis of hyphal tip cell growth in fungi: Spitzenkorper, cytoskeleton and endomembranes after freeze-substitution. J Cell Sci 48: 89-103
  119. Kahmann R, Kämper J (2004) Ustilago maydis: how its biology relates to pathogenic development. New Phytologist 164: 31-42
  120. Kahmann R, Steinberg G, Basse C, Kämper J (2000) Ustilago maydis, the causative agent of corn smut disease. In Fungal Pathology, Kronstad JW (ed), pp 347-371. Dodrecht: Kluwer Academic Publishers Kämper J (2004) A PCR-based system for highly efficient generation of gene replacement mutants in Ustilago maydis. Mol Genet Genomics 271: 103-110
  121. Du TG, Schmid M, Jansen RP (2007) Why cells move messages: the biological functions of mRNA localization. Semin Cell Dev Biol 18: 171-177
  122. Flygare J, Karlsson S (2007) Diamond-Blackfan anemia: erythropoiesis lost in translation. Blood 109: 3152-3154
  123. Korshunov SS, Skulachev VP, Starkov AA (1997) High protonic potential actuates a mechanism of production of reactive oxygen species in mitochondria. FEBS Lett 416: 15-18
  124. Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971
  125. Müller M, Heuck A, Niessing D (2007) Directional mRNA transport in eukaryotes: lessons from yeast. Cell Mol Life Sci 64: 171-180
  126. Feldbrügge M, Zarnack K, Vollmeister E, Baumann S, Koepke J, Konig J, Munsterkotter M, Mannhaupt G (2008) The posttranscriptional machinery of Ustilago maydis. Fungal Genet Biol 45 Suppl 1: S40-46
  127. Korbel D, Wurth S, Kaser M, Langer T (2004) Membrane protein turnover by the m-AAA protease in mitochondria depends on the transmembrane domains of its subunits. EMBO Rep 5: 698-703
  128. Snetselaar KM, Mims CW (1994) Light and electron microscopy of Ustilago maydis hyphae in maize. Mycol Res 98: 347-355
  129. Snetselaar KM (1993) Microscopic observation of Ustilago maydis mating interactions. Exp Mycol 17: 345-355
  130. Snetselaar KM, Mims CW (1993) Infection of maize stigmas by Ustilago maydis: Light and electron microscopy. Phytopathology 83: 843
  131. Snetselaar KM, Mims CW (1992) Sporidial fusion and infection of maize seedlings by the smut fungus Ustilago maydis. Mycologia 84: 193-203
  132. Holliday R (1974) Ustilago maydis. In Handbook of Genetics, King RC (ed), Vol. 1, pp 575-595. New York, USA: Plenum Press
  133. Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C (2002) Genome-wide analysis of mRNAs targeted to yeast mitochondria. EMBO Rep 3: 159-164
  134. Lambert AJ, Brand MD (2004) Superoxide production by NADH:ubiquinone oxidoreductase (complex I) depends on the pH gradient across the mitochondrial inner membrane. Biochem J 382: 511-517
  135. Henrissat B, Bairoch A (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 293 ( Pt 3): 781-788
  136. Fuchs U, Manns I, Steinberg G (2005) Microtubules are dispensable for the initial pathogenic development but required for long-distance hyphal growth in the corn smut fungus Ustilago maydis. Mol Biol Cell 16: 2746-2758
  137. Seiler S, Nargang FE, Steinberg G, Schliwa M (1997) Kinesin is essential for cell morphogenesis and polarized secretion in Neurospora crassa. EMBO J 16: 3025-3034
  138. Lehmler C, Steinberg G, Snetselaar KM, Schliwa M, Kahmann R, Bölker M (1997) Identification of a motor protein required for filamentous growth in Ustilago maydis. EMBO J 16: 3464-3473
  139. Margeot A, Blugeon C, Sylvestre J, Vialette S, Jacq C, Corral-Debrinski M (2002) In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function. EMBO J 21: 6893-6904
  140. Enyenihi AH, Saunders WS (2003) Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae. Genetics 163: 47-54
  141. Kussmaul L, Hirst J (2006) The mechanism of superoxide production by NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria. Proc Natl Acad Sci U S A 103: 7607-7612
  142. Robinson KM, Janes MS, Pehar M, Monette JS, Ross MF, Hagen TM, Murphy MP, Beckman JS (2006) Selective fluorescent imaging of superoxide in vivo using ethidium-based probes. Proc Natl Acad Sci U S A 103: 15038-15043
  143. Haarer B, Viggiano S, Hibbs MA, Troyanskaya OG, Amberg DC (2007) Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies. Genes Dev 21: 148-159
  144. Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C (2007) Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes. Mol Biol Cell 18: 362-368
  145. Koppen M, Metodiev MD, Casari G, Rugarli EI, Langer T (2007) Variable and tissue-specific subunit composition of mitochondrial m-AAA protease complexes linked to hereditary spastic paraplegia. Mol Cell Biol 27: 758-767
  146. Steinberg G (2007) Hyphal growth: a tale of motors, lipids, and the Spitzenkörper. Eukaryot Cell 6: 351- 360
  147. Lin AC, Holt CE (2007) Local translation and directional steering in axons. EMBO J 26: 3729-3736
  148. Rodriguez AJ, Shenoy SM, Singer RH, Condeelis J (2006) Visualization of mRNA translation in living cells. J Cell Biol 175: 67-76
  149. Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, Vale RD (2003) Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc Natl Acad Sci U S A 100: 11429-11434
  150. Kislauskis EH, Li Z, Singer RH, Taneja KL (1993) Isoform-specific 3'-untranslated sequences sort alpha- cardiac and beta-cytoplasmic actin messenger RNAs to different cytoplasmic compartments. J Cell Biol 123: 165-172
  151. Estrada P, Kim J, Coleman J, Walker L, Dunn B, Takizawa P, Novick P, Ferro-Novick S (2003) Myo4p and She3p are required for cortical ER inheritance in Saccharomyces cerevisiae. J Cell Biol 163: 1255- 1266
  152. Tatsuta T, Langer T (2008) Quality control of mitochondria: protection against neurodegeneration and ageing. EMBO J 27: 306-314
  153. Ross AF, Oleynikov Y, Kislauskis EH, Taneja KL, Singer RH (1997) Characterization of a beta-actin mRNA zipcode-binding protein. Mol Cell Biol 17: 2158-2165
  154. Rodriguez AJ, Czaplinski K, Condeelis JS, Singer RH (2008) Mechanisms and cellular roles of local protein synthesis in mammalian cells. Curr Opin Cell Biol 20: 144-149
  155. Komili S, Farny NG, Roth FP, Silver PA (2007) Functional specificity among ribosomal proteins regulates gene expression. Cell 131: 557-571
  156. Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 6: e255
  157. Zimyanin VL, Belaya K, Pecreaux J, Gilchrist MJ, Clark A, Davis I, St Johnston D (2008) In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization. Cell 134: 843-853 Anhang 106
  158. Döhlemann G, van der Linde K, Assmann D, Schwammbach D, Hof A, Mohanty A, Jackson D, Kahmann R (2009) Pep1, a secreted effector protein of Ustilago maydis, is required for successful invasion of plant cells. PLoS Pathog 5: e1000290
  159. MacKenzie JA, Payne RM (2007) Mitochondrial protein import and human health and disease. Biochim Biophys Acta 1772: 509-523
  160. König J, Baumann S, Koepke J, Pohlmann T, Zarnack K, Feldbrügge M (2009) The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs. EMBO J 28: 1855-1866
  161. Elson SL, Noble SM, Solis NV, Filler SG, Johnson AD (2009) An RNA transport system in Candida albicans regulates hyphal morphology and invasive growth. PLoS Genet 5: e1000664
  162. Eliyahu E, Pnueli L, Melamed D, Scherrer T, Gerber AP, Pines O, Rapaport D, Arava Y (2010) Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner. Mol Cell Biol 30: 284-294
  163. Martin KC, Ephrussi A (2009) mRNA localization: gene expression in the spatial dimension. Cell 136: 719-730
  164. Schuster J, Frojmark AS, Nilsson P, Badhai J, Virtanen A, Dahl N (2010) Ribosomal protein S19 binds to its own mRNA with reduced affinity in Diamond-Blackfan anemia. Blood Cells Mol Dis 45: 23-28
  165. Zarnack K, Feldbrugge M (2010) Microtubule-dependent mRNA transport in fungi. Eukaryot Cell 9: 982-990
  166. Micklem DR, Adams J, Grunert S, St Johnston D (2000) Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation. EMBO J 19: 1366-1377
  167. Schultz J, Milpetz F, Bork P, Ponting CP (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci U S A 95: 5857-5864
  168. Holt CE, Bullock SL (2009) Subcellular mRNA localization in animal cells and why it matters. Science 326: 1212-1216
  169. Cohen SN, Chang AC, Hsu L (1972) Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA. Proc Natl Acad Sci U S A 69: 2110-2114
  170. Harris SD, Read ND, Roberson RW, Shaw B, Seiler S, Plamann M, Momany M (2005) Polarisome meets spitzenkörper: microscopy, genetics, and genomics converge. Eukaryot Cell 4: 225-229
  171. Ni L, Snyder M (2001) A genomic study of the bipolar bud site selection pattern in Saccharomyces cerevisiae. Mol Biol Cell 12: 2147-2170
  172. Sharpless KE, Harris SD (2002) Functional characterization and localization of the Aspergillus nidulans formin SEPA. Mol Biol Cell 13: 469-479
  173. Corral-Debrinski M, Blugeon C, Jacq C (2000) In yeast, the 3' untranslated region or the presequence of ATM1 is required for the exclusive localization of its mRNA to the vicinity of mitochondria. Mol Cell Biol 20: 7881-7892
  174. Schulz B, Banuett F, Dahl M, Schlesinger R, Schäfer W, Martin T, Herskowitz I, Kahmann R (1990) The b alleles of U. maydis, whose combinations program pathogenic development, code for polypeptides containing a homeodomain-related motif. Cell 60: 295-306
  175. Harris SD (2006) Cell polarity in filamentous fungi: shaping the mold. Int Rev Cytol 251: 41-77
  176. Jansen RP, Dowzer C, Michaelis C, Galova M, Nasmyth K (1996) Mother cell-specific HO expression in budding yeast depends on the unconventional myosin myo4p and other cytoplasmic proteins. Cell 84: 687-697
  177. Paquin N, Chartrand P (2008) Local regulation of mRNA translation: new insights from the bud. Trends Cell Biol 18: 105-111
  178. Ray PS, Arif A, Fox PL (2007) Macromolecular complexes as depots for releasable regulatory proteins. Trends Biochem Sci 32: 158-164
  179. Mueller O, Kahmann R, Aguilar G, Trejo-Aguilar B, Wu A, de Vries RP (2008) The secretome of the maize pathogen Ustilago maydis. Fungal Genet Biol 45 Suppl 1: S63-70
  180. Feldbrügge M, Kämper J, Steinberg G, Kahmann R (2004) Regulation of mating and pathogenic development in Ustilago maydis. Curr Opin Microbiol 7: 666-672


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